[phenixbb] mmCIF output by phenix.refine

[Mark Saper]

Why does .CIF file output by phenix.refine contain all of the -h -k -l reflections.  The Bijvoet reflections are already contained in the _refln.pdbx_F_minus column of the +h +k +l reflections.  When OneDep at PDB reads in these files, it finds ‘?’ in about half of the reflections, and assigns them a status of ‘x':

Warning: (data block=1): 36739 reflections have status assigned as '?' (changed to 'x') Warning: (data block=1): 36739 reflections have wrong status. Not in list(o,f,x,-,<,h,l)

Is this the correct behavior?  My space group is 19.

Thanks,
Mark

_____________________
Mark A. Saper, Ph.D.
Associate Professor Emeritus of Biological Chemistry
University of Michigan Medical School
saper at umich.edu  |  +1 734 276 6505

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