[phenixbb] Command line phenix.sculpt_ensemble
Whitley, Matthew (NIH/NCI) [C]
matthew.whitley at nih.gov
Thu Sep 7 14:50:33 PDT 2023
Hello all,
I am trying to use the command line tool phenix.sculpt_ensemble to process a series of PDB files in preparation for molecular replacement.
However, when I run the following on the command line:
phenix.sculpt_ensemble 2*.pdb input.target_sequence=RRAS2.fasta
I get the following errors:
Traceback (most recent call last):
File "/Applications/phenix-1.21rc1-5015/build/../modules/phaser/phaser/command_line/sculpt_ensemble.py", line 84, in <module>
sculpt_ensemble.run( phil = params.phil, logger = logger )
File "/Applications/phenix-1.21rc1-5015/modules/phaser/phaser/sculpt_ensemble.py", line 610, in run
logger = logger,
File "/Applications/phenix-1.21rc1-5015/modules/phaser/phaser/sculpt_ensemble.py", line 259, in read_in_target_sequence_files
for ( fname, i ) in itertools.zip_longest( filenames, range( 1, nchains + 1 ) ):
AttributeError: 'module' object has no attribute 'zip_longest'
I am running phenix 1.21rc1-5015-000 on Mac OS 13.5.1.
Any ideas?
Thanks,
Matthew
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