On Thu, May 27, 2010 at 11:32 AM, Ben Eisenbraun <span dir="ltr"><<a href="mailto:bene@hkl.hms.harvard.edu">bene@hkl.hms.harvard.edu</a>></span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div class="im">On Thu, May 27, 2010 at 12:31:41AM -0400, Ben Eisenbraun wrote:<br>
> I can't seem to get the "Open in Coot" option to work in PHENIX. 狢 tested<br>
> version 1.6.1-357 on 32 and 64-bit linux as well as the OS X Intel version,<br>
> and while Coot will open, it won't display the working data.<br>
<br>
</div>Could this be a gtk issue of some sort?<br></blockquote><div><br></div><div>The first thing to check is whether Coot has Python embedded ("coot --version"). 狢f you downloaded the package(s) from Paul's website, they need to have "python" in the package name, otherwise they won't work. �The only time I've seen GTK-related issues is (inconsistently) in the standalone packages on Bill Scott's webpage, and the result was that even the buttons wouldn't appear.</div>
<div><br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Does PHENIX produce some sort of log of GUI events, stderr, whatnot? 狢s<br>
there a debugging mode that would output more information?</blockquote><div><br></div><div>Yes: Utilities menu->Coot console log. 鼦lso, if you start the GUI with "--debug", all of the Coot output will be dumped to the console (and some other Phenix-specific debugging messages, but you can ignore those). �This should indicate what is going wrong on the Mac version. �(Which program are you running, by the way? 泎ecause the programs in Phenix all generate slightly different output, I have to write a separate function for each one for Coot, and PyMOL. . . not fun to maintain.) 𤪻ne other thing to try on Mac: open any program, load a PDB file, right-click on the magnifying glass icon next to the file, and select "Open in Coot". 狢f this doesn't work, something weird is going on.</div>
<div><br></div><div>-Nat</div></div>