<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Thanks, Nat!<div><br></div><div>Just to be clear: the format for lists on the command line for autobuild is different than for a parameters file. In a parameters file, you leave off the quotes for the list; on the command line you use quotes around the entire list.</div><div><br></div><div>All the best,</div><div>Tom T</div><div><br></div><div><br><div><div>On Jul 14, 2010, at 4:40 PM, Nathaniel Echols wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">On Wed, Jul 14, 2010 at 3:04 PM, J J <span dir="ltr"><<a href="mailto:phenix.upitt@gmail.com">phenix.upitt@gmail.com</a>></span> wrote:<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"> <div class="gmail_quote"><div>Tom,</div><div><br></div><div>I have tried what you suggested.</div></div></blockquote><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"> <div class="gmail_quote"> <div><span class="Apple-style-span" style="font-family: monospace; font-size: medium; white-space: pre; "><i>rebuild_chain_list= "A B"</i></span></div><div><span style="font-family:Times, 'Sans Serif', Arial;font-size:medium"><pre><i>rebuild_res_end_list= "50 50"
</i><i>rebuild_res_start_list="10 10"</i></pre><pre>Both do not work.</pre></span></div></div></blockquote><div>Try leaving the quotes out or enclosing only the individual chain IDs or residue numbers in quotes - these parameters are all supposed to be lists of values, and the parser groups anything in quotes as a single list item.</div> <div><br></div><div>-Nat</div></div> _______________________________________________<br>phenixbb mailing list<br><a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>http://phenix-online.org/mailman/listinfo/phenixbb<br></blockquote></div><br><div> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div><div><div><br>Thomas C. Terwilliger<br>Mail Stop M888<br>Los Alamos National Laboratory<br>Los Alamos, NM 87545<br><br>Tel: 505-667-0072 email: <a href="mailto:terwilliger@LANL.gov">terwilliger@LANL.gov</a><br>Fax: 505-665-3024 SOLVE web site: <a href="http://solve.lanl.gov">http://solve.lanl.gov</a><br>PHENIX web site: http:<a href="http://www.phenix-online.org">www.phenix-online.org</a><br>ISFI Integrated Center for Structure and Function Innovation web site: <a href="http://techcenter.mbi.ucla.edu">http://techcenter.mbi.ucla.edu</a><br>TB Structural Genomics Consortium web site: <a href="http://www.doe-mbi.ucla.edu/TB">http://www.doe-mbi.ucla.edu/TB</a></div><div>CBSS Center for Bio-Security Science web site: <a href="http://www.lanl.gov/cbss">http://www.lanl.gov/cbss</a><br><br></div></div></div></div><br></div></div></span><br class="Apple-interchange-newline"> </div><br></div></body></html>