<div><meta http-equiv="content-type" content="text/html; charset=utf-8">Hi Nat,<div><br></div><div>Thanks for your reply. </div><div><br></div><div>I am now writing a bash script to call phenix.phaser. I do not want to use shell command like mv or cp the files to desired directory, as I will generate a lot outputs. I hope I could change some parameters in params.eff to achieve this goal more easily. But as you said, it is not possible, right? Just for confirm. Thanks for your reply.</div>
<div><br>GP</div><div><br></div><br><div class="gmail_quote">On Mon, Jul 25, 2011 at 7:41 PM, Nathaniel Echols <span dir="ltr"><<a href="mailto:nechols@lbl.gov" target="_blank">nechols@lbl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div>On Mon, Jul 25, 2011 at 8:09 AM, G Y <<a href="mailto:gysubscribe@gmail.com" target="_blank">gysubscribe@gmail.com</a>> wrote:<br>
> I am writing a script for phenix.phaser. The keyword "output_dir" seems not<br>
> work. In params.eff file I give it a line like:<br>
> solution = None<br>
> output_dir = /home/.../somedir/<br>
</div>> ...<br>
<div>> But I can not generate output file in the specified directory(somedir in the<br>
> above case). The output files are always put in current working directory.<br>
> Did I choose a wrong keyword to do this? What would be the correct way?<br>
<br>
</div>This parameter exists solely for use in the GUI; it won't have any<br>
effect on the command line. In hindsight this probably wasn't the<br>
best way to handle it - I should have enclosed it in a "gui {}" block<br>
to make the purpose clear. However, the intention was always that the<br>
program will output files to the current working directory, as this<br>
simplifies things considerably for the GUI. Depending on what you're<br>
trying to accomplish, calling phenix.phaser from a shell or Python<br>
script which changes to (and creates if necessary) the desired<br>
directory is probably the best solution.<br>
<br>
-Nat<br>
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</blockquote></div><br></div>