The list of atoms should appear next to the line you sent. Could you send that list to me (or simply the whole log file)?<div><br><br><div class="gmail_quote">On Fri, Jan 13, 2012 at 1:00 AM, Dialing Pretty <span dir="ltr"><<a href="mailto:hdc123hdc123@yahoo.com">hdc123hdc123@yahoo.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div style="font-size:12pt;font-family:times new roman,new york,times,serif"><div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">
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<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">Dear All,</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">I just did a Phenix refine, but it gave the following sorry message:</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">Number of atoms with unknown nonbounded energy type symbol: 3.</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">I remember when I process the peptide with Coot, several H atoms were separated from the atoms they were attached to. I do not know whether this is the reason why the Phenix gives symbol 3.</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">I am looking forward to getting your reply.</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">Cheers,</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">Dialing<var></var></div>
<div style="FONT-FAMILY:times new roman,new york,times,serif;FONT-SIZE:12pt">�</div></div></div></div></div>
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