<div dir="ltr">In phenix.refine you control simulated annealing that way, but phenix.den_refine is a specialized protocol which takes advantage of much of the phenix.refine machinery while controlling most things through the 'den' scope. It's a bit of a hack, but it was the fastest way to pull a prototype together. You'll definitely have annealing cycles without turning them on in the main scope, so long as 'den' is selected as a strategy (which is is by default).<div>
<br></div><div>If you ran the main version of simulated annealing you would add annealing cycles which didn't take avantage of the DEN network update steps, which is counter to how each cycle is meant to run.</div><div>
<br></div><div style>Jeff</div><div><br></div><div style><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Jun 11, 2013 at 12:06 PM, Andreas F�rster <span dir="ltr"><<a href="mailto:docandreas@gmail.com" target="_blank">docandreas@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">I do indeed. �I thought I control simulated annealing through this? �If I turn this off, will I still get simulated annealing, activated through DEN?<br>
<br>
Thanks.<span class="HOEnZb"><font color="#888888"><br>
<br>
<br>
Andreas</font></span><div class="im HOEnZb"><br>
<br>
<br>
<br>
On 11/06/2013 4:54, Jeff Headd wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Andreas,<br>
<br>
My guess is that you have main.simulated_annealing=True also active in<br>
your parameter file. You need to set this to False, and then the<br>
refinement should proceed.<br>
<br>
Jeff<br>
<br>
</blockquote></div><div class="HOEnZb"><div class="h5">
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