<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:10pt">Since you are already in Phenix - How about the option under "Model tools" called "PDB file editor"?<br><br>When you open this option it asks for a pdb file, and once loaded you can select (click on) your chain. Click "Edit" from the top bar and select "Renumber residues". It pops up a box asking how much to increment the numbers by and produces the renumbered pdb file. (Note - it will accept negative numbers as well)<br><br>Many other options there too...<br>Kind regards,<br>Christina<br><br><br>Christina R. Bourne, Ph.D.<br>Assistant Professor<br>Dept. of Chemistry and Biochemistry<br>University of Oklahoma<br>101 Stephenson Parkway, SLSRC Rm 2610<br>Norman, OK 73019<br>Office +1 (405) 325-5348<br>Mobile +1 (405)
338-5616<br>http://faculty-staff.ou.edu/B/Christina.Bourne-1/CRBourne/Welcome.html <br><br><div><span><br></span></div><div style="display: block;" class="yahoo_quoted"> <br> <br> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 10pt;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 12pt;"> <div dir="ltr"> <font face="Arial" size="2"> On Wednesday, February 26, 2014 11:21 PM, Rojan Shrestha <rojan@riken.jp> wrote:<br> </font> </div> <div class="y_msg_container"><div id="yiv2385750055"><div><div>Hello,</div><div><br></div><div>I have found the program phenix.pdbtools. Maybe, it can renumber residues of pdb. I have found the options <b>renumber_residues</b> options but I am unable to see the options for starting residues.</div><div><br></div><div>I have pdb starts from 1 and want to renumber 1 into 250. Can somebody tell
me how to put the option for starting residue?</div><div><br></div><div>Regards,</div><div><br></div><div>Rojan </div></div></div><br>_______________________________________________<br>phenixbb mailing list<br><a ymailto="mailto:phenixbb@phenix-online.org" href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br><a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br><br><br></div> </div> </div> </div> </div></body></html>