<html>
<head>
<meta content="text/html; charset=windows-1252"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Hi Swanand,<br>
<br>
yes:<br>
<br>
iotbx.show_distances your.pdb > all_distances
<meta charset="utf-8">
<meta charset="utf-8">
<br>
<br>
will show long list of all distances between pairs including
symmetry related. For symmetry related it will also show the
symmetry operator the relates involved atoms.<br>
<br>
Look implementation for underlying code.<br>
<br>
Type iotbx.show_distances without arguments to see all options.<br>
<br>
Pavel<br>
<br>
<div class="moz-cite-prefix">On 12/5/14 8:41 AM, Swanand Gore wrote:<br>
</div>
<blockquote cite="mid:5481E054.6090406@ebi.ac.uk" type="cite">Hi
All,
<br>
<br>
I am sure this has been asked and answered a lot of times...
<br>
<br>
Is there a python script somewhere that reads a mmcif file and for
any residue in it, returns a list of residues within a certain
distance of it. And it returns any symmetry-related copies of
residues too within that distance.
<br>
<br>
Any pointer greatly appreciated.
<br>
<br>
Thanks,
<br>
Swanand
<br>
<br>
</blockquote>
<br>
</body>
</html>