<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class=""><br class=""></div><div class="">thanks Jonah and Nat!</div><div class="">That is exactly what I was looking for.</div><div class="">Ciao,</div><div class="">S</div><br class=""><div><blockquote type="cite" class=""><div class="">On 26 Feb 2015, at 16:23, nathanielclar5 . &lt;<a href="mailto:nathanielclar5@gmail.com" class="">nathanielclar5@gmail.com</a>&gt; wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Try turning them off in the phenix window (molprobity tab).&nbsp; If you delete the generic object, they come back every time you use real space refine (or auto-fit rotamer, etc.) in coot.<div class=""><br class=""><div class="">Nat</div></div></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On Thu, Feb 26, 2015 at 9:17 AM, Hattne, Johan <span dir="ltr" class="">&lt;<a href="mailto:hattnej@janelia.hhmi.org" target="_blank" class="">hattnej@janelia.hhmi.org</a>&gt;</span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><span class=""><br class="">
On Feb 26, 2015, at 6:32, Sebastiano Pasqualato &lt;<a href="mailto:sebastiano.pasqualato@gmail.com" class="">sebastiano.pasqualato@gmail.com</a>&gt; wrote:<br class="">
<br class="">
&gt;<br class="">
&gt; Hi all,<br class="">
&gt; a quick question: how do I get rid of the clash dots that appear in Coot, when opened from a phenix job?<br class="">
&gt; thanks a lot in advance,<br class="">
<br class="">
</span>Will “Delete All Generic Display Objects” in “Draw”-&gt;"Generic Display Objects…” do what you want?<br class="">
<br class="">
// Johan<br class="">
<br class="">
<br class="">
&nbsp; &nbsp; &nbsp; &nbsp; &nbsp; Research Specialist @ Gonen Lab<br class="">
____________________________________________________<br class="">
&nbsp; &nbsp; Janelia Research Campus * 19700 Helix Drive<br class="">
Ashburn, VA 20147 * <a href="tel:%2B1%20%28571%29%20209-4000%20extension%203376" value="+15712094000" class="">+1 (571) 209-4000 extension 3376</a><br class="">
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