<div dir="ltr">Ludovic<div><br></div><div>I don't have access to Centos7 but have you considered following the advice of the error message and set $PYTHONHOME?</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr">Cheers<div><br></div><div>Nigel<div><br></div><div>---</div><div>Nigel W. Moriarty<br>Building 33R0349, Physical Biosciences Division<br>Lawrence Berkeley National Laboratory<br>Berkeley, CA 94720-8235<br>Phone : 510-486-5709 Email : NWMoriarty@LBL.gov<br>Fax : 510-486-5909 Web : <a href="http://CCI.LBL.gov" target="_blank">CCI.LBL.gov</a></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Wed, Sep 23, 2015 at 9:11 AM, ludovic Pecqueur <span dir="ltr"><<a href="mailto:ludovic.pecqueur@college-de-france.fr" target="_blank">ludovic.pecqueur@college-de-france.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear Developers,<br>
<br>
I have a fresh Centos 7 system and after installing Phenix I wanted to compile the Rosetta.refine module. (Rosetta from source version 2015.31.58019)<br>
<br>
I have succesfully compiled Rosetta but when I try to build the dedicated Rosetta for Rosetta_refine with rosetta.build_phenix_interface after setting up PHENIX_ROSETTA_PATH and ROSETTA3_DB I get the following error message:<br>
<br>
[XXX@...]$ rosetta.build_phenix_interface nproc=6<br>
False<br>
scons: Reading SConscript files ...<br>
Running versioning script ... Done. (0.1 seconds)<br>
Could not find platform independent libraries <prefix><br>
Could not find platform dependent libraries <exec_prefix><br>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]<br>
ImportError: No module named site<br>
CalledProcessError: Command '['./update_options.sh']' returned non-zero exit status 1:<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConstruct", line 172:<br>
main()<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConstruct", line 163:<br>
SConscript("SConscript", "build")<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 614:<br>
return method(*args, **kw)<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 551:<br>
return _SConscript(self.fs, *files, **subst_kw)<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 260:<br>
exec _file_ in call_stack[-1].globals<br>
File "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConscript", line 28:<br>
subprocess.check_call(["./update_options.sh"])<br>
File "/usr/local/PROGRAMS/XTAL/PHENIX/phenix-1.10-2155/base/lib/python2.7/subprocess.py", line 540:<br>
raise CalledProcessError(retcode, cmd).<br>
<br>
If you have any idea of what could cause the problem, I would welcome any suggestions.<br>
I updated Phenix and I could compile phenix.rosetta_refine without problems on Centos 6.7.<br>
<br>
Thank you very much for your time and help.<br>
<br>
Kind regards,<br>
<br>
Ludovic.<br>
<br>
<br>
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</blockquote></div><br></div>