<div dir="ltr">Hi Natalia,<div><br></div><div>Are you using old settings to refine your new structure? If you're using the GUI, try starting with a new job (e.g. clicking on phenix.refine instead of restoring an old job). If you're using the CLI, you can send me your parameter file (ends with .eff) and I can take a look. There could be a selection for Li that is floating around if you're using the same parameter file from and earlier job.</div><div><br></div><div>Let me know if that doesn't work for you. Thanks!</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Feb 18, 2016 at 5:00 PM, Natalia Ketaren <span dir="ltr"><<a href="mailto:nketaren@mail.rockefeller.edu" target="_blank">nketaren@mail.rockefeller.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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Hello,
<div><br>
</div>
<div>I’m building a structure at the moment, and I have since removed lithium ions from structure. However, when I go to refine using phenix, I get the error message:</div>
<div>“No atom selected: name LI and Chain F and rename LI resseq 8”</div>
<div><br>
</div>
<div>I’ve tried using earlier files, prior to my addition of lithium ions and I still get the same error message. I’m using Phenix version 1.10.1-2155-000</div>
<div>Could anyone help me overcome this error message?</div>
<div><br>
</div>
<div>Cheers,</div>
<div><br>
</div>
<div>Nat</div>
<div><br>
</div>
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_____________________________</div>
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Natalia E. Ketaren, PhD<br>
Research Associate<br>
Rout Laboratory<br>
Box 213<br>
The Rockefeller University<br>
1230 York Avenue<br>
New York, NY 10065<br>
<br>
Tel: <a href="tel:%28212%29%20327-8136" value="+12123278136" target="_blank">(212) 327-8136</a><br>
Fax: <a href="tel:%28212%29%20327-7193" value="+12123277193" target="_blank">(212) 327-7193</a><br>
<a href="mailto:Natalia.Ketaren@rockefeller.edu" target="_blank">Natalia.Ketaren@rockefeller.edu</a><br>
website: <a href="http://lab.rockefeller.edu/rout/" target="_blank">http://lab.rockefeller.edu/rout/</a><br>
NCDIR: <a href="http://www.ncdir.org/" target="_blank">http://www.ncdir.org/</a></div>
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