<div dir="ltr">Hi Oliver,<div><br></div><div>Thank you for pointing this out. We will work on this and this feature should become available shortly.</div><div>Meanwhile, I would recommend to use phenix.pdb_as_cif command-line tool to convert pdb files to mmcif as it would preserve more information (for example, secondary structure annotations).</div><div><br></div><div>Best regards,</div><div>Oleg Sobolev.</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Sat, Sep 24, 2016 at 2:22 AM, Oliver Clarke <span dir="ltr"><<a href="mailto:olibclarke@gmail.com" target="_blank">olibclarke@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Any chance of getting mmcif output in phenix.real_space_refine? Or does it exist and I have just overlooked the option? Right now I can use mmcif as input, but the refined coordinates are still written as pdb (hybrid32). The PDB unfortunately doesn’t accept hybrid32, so I always need to convert to mmcif with phenix.pdbtools prior to deposition - no big deal but would make life easier for large-ish structures.<br>
<br>
Cheers<br>
Oli.<br>
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