<div dir="ltr">Hi,<div><br></div><div>To add a reference model:</div><div><br></div><div>a) GUI: drag and drop the model file into the list control, highlight the file, click on "Modify file data type" and choose "reference model"</div><div><br></div><div>b) Command line (with default values): </div><div><span style="color:rgb(0,0,0)"> phenix.refine data.hkl model.pdb reference_model.enabled=True </span><span style="color:rgb(0,0,0)">reference_model.file=<wbr>reference.pdb</span></div><div><font color="#000000"> (more info is on the <a href="https://www.phenix-online.org/documentation/reference/refinement.html#using-a-reference-model-in-refinement" target="_blank">documentation page</a>)</font></div><div><font color="#000000"><br></font></div><div><font color="#000000">Best wishes,</font></div><div><font color="#000000"><br></font></div><div><font color="#000000">Dorothee</font></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Dec 5, 2017 at 7:12 PM, yamei yu <span dir="ltr"><<a href="mailto:ymyuxtal@163.com" target="_blank">ymyuxtal@163.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Dear all,<div><br></div><div>I want to use “reference model” in a low resolution structure refinement. Do I need to set this parameter “reference_xray_structure”?</div><div>What does “reference_xray_structure” stand for? </div><div><br></div><div><div>Many thanks and best wishes</div><div><br></div><div>
<div style="color:rgb(0,0,0);font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px"><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)"><br class="m_3128400809276904575Apple-interchange-newline">******************************<wbr>******************</div><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)"><br></div><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)">Yamei Yu</div><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)">Associate Professor</div><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)">State Key Laboratory of Biotherapy／Collaborative Innovation </div><div style="margin:0px;font-size:10.5px;color:rgb(47,42,43)">Center of Biotherapy, </div></div><div style="font-family:Helvetica;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;margin:0px;font-size:10.5px;color:rgb(47,42,43)"><div style="margin:0px;font-size:10.5px">West China <span style="font-size:10.5px">Hospital, </span></div><div style="margin:0px;font-size:10.5px"><span style="font-size:10.5px">Sichuan University,</span><span style="font-size:10.5px">Chengdu,610041, P.R.</span><span style="font-size:10.5px">China</span></div><div style="margin:0px;font-size:10.5px">Tel: <a href="tel:(588)%20201-3485" value="+15882013485" target="_blank">15882013485</a></div><div style="margin:0px;font-size:10.5px">Email: <a href="mailto:ymyuxtal@gmail.com" target="_blank">ymyuxtal@gmail.com</a></div><div style="margin:0px;font-size:10.5px"> <a href="mailto:ymyuxtal@163.com" target="_blank">ymyuxtal@163.com</a></div><div style="margin:0px;font-size:10.5px"> <a href="mailto:yamei_yu@scu.edu.cn" target="_blank">yamei_yu@scu.edu.cn</a></div></div>
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