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<p class="MsoNormal">The EMAN2 script e2spt_align.py can do that, and it will save the transformation matrix in a JSON file.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">-Tom<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="color:black">--</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"><a href="http://medicine.buffalo.edu/content/medicine/faculty/profile.html?ubit=tdgrant"><span style="color:#0563C1">Thomas D. Grant, Ph.D.</span></a></span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Assistant Professor</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Department of Structural Biology</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"><a href="http://medicine.buffalo.edu/" target="_blank"><span style="color:#1155CC">Jacobs School of Medicine and Biomedical Sciences</span></a></span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">University at Buffalo<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Room 5128</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">955 Main Street<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Buffalo, New York 14203</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Office: 716-829-5490</span><span style="color:#222222"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Email: <a href="mailto:tdgrant@buffalo.edu" target="_blank"><span style="color:#1155CC">tdgrant@buffalo.edu</span></a></span><span style="color:#222222"><o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b><span style="font-size:12.0pt;color:black">From: </span></b><span style="font-size:12.0pt;color:black"><phenixbb-bounces@phenix-online.org> on behalf of Ahmad Khalifa <underoath006@gmail.com><br>
<b>Date: </b>Sunday, December 20, 2020 at 4:34 PM<br>
<b>To: </b>PHENIX user mailing list <phenixbb@phenix-online.org><br>
<b>Subject: </b>[phenixbb] Calculating the transformation matrix of density map alignment<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I have two density maps that I'm trying to align, or more precisely, calculate the transformation matrix (rotation and translation) of their alignment (moving one map and aligning it with the other map). Is there a way to accomplish that
using phenix or any other tool? <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Thanks a lot and happy holidays. <o:p></o:p></p>
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