<div dir="ltr">Hi Dong-Hua,<div><br></div><div>Sorry for the late reply, this looks like a font-config issue. Can you print out your environment variables with "printenv" from a terminal? We ship our own GUI dependencies, but there may be an environment variable that is overriding our settings.</div><div><br clear="all"><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, May 13, 2021 at 1:39 PM Dong-Hua Chen <<a href="mailto:donghua.chen@gmail.com">donghua.chen@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div dir="ltr">Hi All,<div><br></div><div>I asked Stanford cluster admin and he is questioning the CentOS version incompatibilities (see the following). Any suggestions?</div><div><br></div><div>Thanks</div><div>Dong-Hua</div><div><br></div><div><br></div><div><br></div><div><div class="gmail_quote"><div dir="ltr" class="gmail_attr">---------- Forwarded message ---------<br>From: <strong class="gmail_sendername" dir="auto">Kilian Cavalotti</strong> <span dir="auto"><<a href="mailto:srcc-support@stanford.edu" target="_blank">srcc-support@stanford.edu</a>></span><br>Date: Thu, May 13, 2021 at 12:20 PM<br>Subject: Re: [SRCC #47733] Fwd: [phenixbb] Phenix GUI showing unreadable squares<br>To: <<a href="mailto:donghua.chen@gmail.com" target="_blank">donghua.chen@gmail.com</a>><br></div><br><br><div style="font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,sans-serif;font-size:14px">
<div style="font-family:-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Helvetica Neue",Arial,sans-serif;font-size:14px">
<div dir="ltr">
<div>
<span>Hi </span><span>Dong-Hua,</span>
</div>
<div dir="ltr">
<br>It looks like the software is built for CentOS 6.10, while Sherlock is running CentOS 7.x, so incompatibilities are likely.<br>Is there a way to rebuild it from source. maybe?<br><br>
</div>
</div>
<div dir="ltr"><div>
<div><span>Cheers,</span></div>
<div><span style="text-align:justify">--</span></div>
<div>
<b style="text-align:justify">Kilian Cavalotti</b><br>
</div>
<div style="text-align:justify"><span style="text-align:initial">Stanford Research Computing Center<br></span></div>
<div style="text-align:justify">
<b style="text-align:initial">Sherlock // </b><a href="https://www.sherlock.stanford.edu" rel="noreferrer" target="_blank">web</a><span> | </span><a href="https://www.sherlock.stanford.edu/docs" rel="noreferrer" target="_blank">docs</a><span> | </span><a href="https://status.sherlock.stanford.edu" rel="noreferrer" target="_blank">status</a><span> | </span><a href="https://news.sherlock.stanford.edu" rel="noreferrer" target="_blank">news</a><span style="color:rgb(255,255,255);font-family:fdtktid;font-size:0px">47733:1231609</span></div></div></div></div></div></div></div></div></div>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" rel="noreferrer" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></blockquote></div>