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<p>Hi Vincent,</p>
<p>this looks like a very specialized task that I've never heard of
before! We can add a tool to do that if this becomes something
that more than one person does more than once. Meanwhile, a simple
script in a language of your preference (python, linux shell, etc)
should do the job. I can help with a script if needed, let me
know!<br>
</p>
<p>Also.. just curious -- what is "<font size="4"><font
face="monospace">3D variability of this map</font></font>"? Is
this one map that is a composition of several map or an ensemble
of maps?</p>
<p>Pavel<br>
</p>
<div class="moz-cite-prefix">On 1/11/22 01:48, vincent Chaptal
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:7d57b86d-4765-2b17-b53a-4d1a270fcaba@ibcp.fr">
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<font size="4"><font face="monospace">Hi Phenix-ers, <br>
<br>
I thought to ask for something that I believe you have already
implemented, but I'm not sure of the best tool to use. <br>
<br>
I have a cryoEM map where I refine my "high resolution"
structure. I also have the 3D variability of this map that
shows several maps varying around the consensus high-res map.
I want to refine an ensemble (20) of structures, one for every
20 maps around the consensus map. <br>
Is there a tool in phenix to do this? <br>
<br>
I could refine individually the high-res structure into each
map incrementally; since every map differs a little from the
original one, Real-space-refinement could move the structure a
little at a time. Then I could combine all the PDBs in an
ensemble? <br>
A tool to refine variability would be very useful. Input could
be a PDB and an ensemble of maps, and output would be all the
PDBs combined? <br>
<br>
Thank you. <br>
<br>
All the best<br>
Vincent </font></font><br>
<br>
<br>
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<p class="p1"><span class="s1">Vincent Chaptal, PhD</span></p>
<p class="p1"><span class="s1">Director of GdR APPICOM</span></p>
<p class="p1"><span class="s1">Drug Resistance and Membrane
Proteins Lab</span></p>
<p class="p2"><span class="s1"></span><br>
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<p class="p1"><span class="s1">MMSB -UMR5086</span></p>
<p class="p1"><span class="s1">7 passage du Vercors<span
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<p class="p1"><span class="s1">69007 LYON</span></p>
<p class="p1"><span class="s1">FRANCE</span></p>
<p class="p1"><span class="s1">+33 4 37 65 29 01</span></p>
<p class="p1"><span class="s1"><a class="moz-txt-link-freetext"
href="http://www.appicom.cnrs.fr" moz-do-not-send="true">http://www.appicom.cnrs.fr</a></span></p>
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