<div dir="ltr"><p style="margin:0in"><font face="arial, sans-serif">Dear Colleagues,</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">The <span class="gmail-il">Phenix</span> developers will be holding a day-long satellite <span class="gmail-il">workshop</span> on July 29th, prior to the ACA meeting in <span class="gmail-il">Portland</span>, Oregon. This <span class="gmail-il">Phenix</span> <span class="gmail-il">user</span> <span class="gmail-il">workshop</span> will focus on using predicted models for crystallography and cryo-EM.</font></p><p style="margin:0in"><font face="arial, sans-serif"><br></font></p><p style="margin:0in"><font face="arial, sans-serif" color="#ff0000"><b>Please note: Registration closes on July 8th!</b></font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">The format of the <span class="gmail-il">workshop</span> will be demos of the use of <span class="gmail-il">Phenix</span> programs combined with slides to explain the theory. We expect an interactive meeting where attendees can ask questions for the <span class="gmail-il">Phenix</span> team to answer. </font><span style="font-family:arial,sans-serif">Topics will cover aspects of macromolecular structure determination in <span class="gmail-il">Phenix</span>.</span></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">For registration, see the ACA 2022 website: <a href="https://www.acameeting.com/aca-wk2" target="_blank">https://www.acameeting.com/aca-wk2</a>. You need to register for the main meeting in order to participate in the <span class="gmail-il">workshop</span>. This is an in-person <span class="gmail-il">workshop</span> (no hybrid option). </font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">Lecturers: Pavel Afonine, Dorothee Liebschner, Billy Poon, Tom Terwilliger</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><p style="margin:0in"><font face="arial, sans-serif">Looking forward to seeing you there!</font></p><p style="margin:0in"><font face="arial, sans-serif"><br></font></p><p style="margin:0in"><font face="arial, sans-serif">The <span class="gmail-il">Phenix</span> team</font></p><div><br></div><div><p style="margin:0in"><font face="arial, sans-serif">Detailed Program:</font></p><p style="margin:0in"><font face="arial, sans-serif"> </font></p><div style="direction:ltr"><font color="#888888"></font><font color="#888888"></font><table border="1" cellpadding="0" cellspacing="0" valign="top" title="" summary="" style="direction:ltr;border-collapse:collapse;border-style:solid;border-color:rgb(163,163,163);border-width:1pt"><tbody><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">8:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Welcome: Introduction to <span class="gmail-il">Phenix</span>, Introduction to the GUI, set up <span class="gmail-il">Phenix</span></font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">8:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Overview -- Strategy for X-ray or Cryo-EM structure determination using AlphaFold models (lecture)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">9:15</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Predicting your structure with AlphaFold and trimming it with ProcessPredictedModel (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">9:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Solving an X-ray structure automatically by MR with PredictAndBuild (demo with pre-computed data)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">10:15</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Break</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">10:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Evaluating X-ray data with Xtriage</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">11:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Xray refinement (lecture)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">11:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Xray refinement with AlphaFold reference models (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">12:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Lunch</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Ligands (lecture &amp; demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM Data evaluation with Mtriage (short lecture &amp; demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">13:45</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.4229in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM map manipulations, map improvement with LocalAnisoSharpen and ResolveCryoEM (demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">14:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;background-color:rgb(243,243,243);vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Break</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">15:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Automatic cryo-EM map interpretation with PredictAndBuild (demo with pre-computed data)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">15:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Cryo-EM refinement (lecture and demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:00</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Model validation (lecture &amp; demo)</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:30</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">Q&amp;A</font></p></td></tr><tr><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:0.6673in;padding:4pt"><p style="margin:0in;text-align:center"><font face="arial, sans-serif">16:50</font></p></td><td style="border-style:solid;border-color:rgb(163,163,163);border-width:1pt;vertical-align:top;width:6.3534in;padding:4pt"><p style="margin:0in"><font face="arial, sans-serif">finish: <span class="gmail-il">workshop</span> survey and wrap up</font></p></td></tr></tbody></table></div></div><div><br></div>-- <br><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging<br></div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org/" style="color:rgb(17,85,204)" target="_blank">https://phenix-online.org</a></div></div></div></div>