<div dir="ltr">Hi James,<div><br></div><div>Which installer are you using (version and graphical or command-line)? I have not updated my laptop to Sonoma yet, so I am not able to test.</div><div><br><div><div><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Sep 28, 2023 at 8:54 AM Kizziah, James <<a href="mailto:kizziah4@uab.edu">kizziah4@uab.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div class="msg-5382048489807397285">
<div lang="EN-US" style="overflow-wrap: break-word;">
<div class="m_-98045628600597144WordSection1">
<p class="MsoNormal">Hi all,<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="m_-98045628600597144p1">I am having trouble getting Phenix to open on a new mac. <br>
<br>
I downloaded the latest official release of the point-and-click installer, ran xattr -c on it, and installed without issue. Initially, I can create the first project directory (or recreate it if I remove the .phenix directory), but then I get a notice that
another instance of Phenix is running with the associated PID. If I continue anyway, python quits unexpectedly, and if Phenix is opened in the command line, this reply is given:
<u></u><u></u></p>
<p class="m_-98045628600597144p1" style="margin-left:0.5in">“<span class="m_-98045628600597144s1">python[9678:116756] It's not legal to call -layoutSubtreeIfNeeded on a view which is already being laid out.</span><span class="m_-98045628600597144apple-converted-space">
</span><span class="m_-98045628600597144s1">If you are implementing the view's -layout method, you can call -[super layout] instead. Break on void _NSDetectedLayoutRecursion(void) to debug.</span><span class="m_-98045628600597144apple-converted-space">
</span><span class="m_-98045628600597144s1">This will be logged only once.</span><span class="m_-98045628600597144apple-converted-space">
</span><span class="m_-98045628600597144s1">This may break in the future.</span><u></u><u></u></p>
<p class="m_-98045628600597144p2"><u></u> <u></u></p>
<p class="m_-98045628600597144p1" style="text-indent:0.5in"><span class="m_-98045628600597144s1">[3]</span><span class="m_-98045628600597144apple-converted-space">
</span><span class="m_-98045628600597144s1">segmentation fault</span><span class="m_-98045628600597144apple-converted-space">
</span><span class="m_-98045628600597144s1">phenix”<u></u><u></u></span></p>
<p class="m_-98045628600597144p1"><span class="m_-98045628600597144s1"><u></u> <u></u></span></p>
<p class="m_-98045628600597144p1">However, the PID for this supposed other instance doesn’t exist. This occurs every time Phenix is run from Applications or in the command line, even after restarting the laptop (without resuming programs) or deleting and reinstalling Phenix.
<u></u><u></u></p>
<p class="m_-98045628600597144p1"><u></u> <u></u></p>
<p class="m_-98045628600597144p1">Any ideas how to solve this problem?<u></u><u></u></p>
<p class="m_-98045628600597144p1"><u></u> <u></u></p>
<p class="m_-98045628600597144p1">Thanks,<u></u><u></u></p>
<p class="m_-98045628600597144p1">James<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
</div>
_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org" target="_blank">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" rel="noreferrer" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
Unsubscribe: <a href="mailto:phenixbb-leave@phenix-online.org" target="_blank">phenixbb-leave@phenix-online.org</a></div></blockquote></div>