<div dir="ltr">Hi John,<div><br></div><div>Thank you for reporting the issue. I have fixed it. This tool should work again in Phenix builds starting from 5188.</div><div><br></div><div>Best regards,</div><div>Oleg Sobolev.</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, Dec 20, 2023 at 9:35 AM Tanner, John J. <<a href="mailto:TannerJJ@missouri.edu">TannerJJ@missouri.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="msg-7641612548450203486">
<div lang="EN-US" style="overflow-wrap: break-word;">
<div class="m_2055055195256365800WordSection1">
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1"><span style="font-size:11pt;font-family:Calibri,sans-serif">I’ve noticed that command line phenix.model_vs_sequence does not work in phenix-1.21rc1-5156.
<u></u><u></u></span></span></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1"><span style="font-size:11pt;font-family:Calibri,sans-serif"><u></u> <u></u></span></span></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1"><span style="font-size:11pt;font-family:Calibri,sans-serif">Here’s the data:<u></u><u></u></span></span></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1"><u></u> <u></u></span></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$ which phenix.model_vs_sequence</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">/linux/src/phenix-1.21rc1-5156/build/bin/phenix.model_vs_sequence</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$ phenix.model_vs_sequence 8DKP.pdb ../depo/8DKP.fasta</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Traceback (most recent call last):</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">File "/linux/src/phenix-1.21rc1-5156/build/../modules/cctbx_project/mmtbx/command_line/model_vs_sequence.py", line 75, in <module></span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">run(sys.argv[1:])</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">File "/linux/src/phenix-1.21rc1-5156/build/../modules/cctbx_project/mmtbx/command_line/model_vs_sequence.py", line 48, in run</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">pdb_in = iotbx.pdb.inpu(params.input.pdb_file)</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">AttributeError: 'module' object has no attribute 'inpu'</span><u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">It worked fine in <span class="m_2055055195256365800s1">phenix-1.20.1-4487</span>:<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$ source /linux/src/phenix-1.20.1-4487/phenix_env.csh</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$ which phenix.model_vs_sequence</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">/linux/src/phenix-1.20.1-4487/build/bin/phenix.model_vs_sequence</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$ phenix.model_vs_sequence 8DKP.pdb ../depo/8DKP.fasta</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Skipping non-polymer chain 'A'</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Skipping non-polymer chain 'B'</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Skipping non-polymer chain 'A'</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Skipping non-polymer chain 'B'</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Chain 'A':</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">best matching sequence: 8DKP_1|Chains</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">sequence identity: 100.00%</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">10 residue(s) missing from PDB chain (3 at start, 1 at end)</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">1 gap(s) in chain</span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">---QSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHXXXXX</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">SRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHSGSGS</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">XGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">SGS---------------------------------------------------------</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMGEQFVTGETIREA</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">|||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">---------------------------------------------MMGEQFVTGETIREA</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIYEGPGISI</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIYEGPGISI</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">KLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLC</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">KLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLC</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKRAQLD</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKRAQLD</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">GLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKY</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">GLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKY</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">EFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVHRIN</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">EFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVHRIN</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">DPKVSIDELIADPVEVV-</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">|||||||||||||||||
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">DPKVSIDELIADPVEVVR</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">Chain 'B':</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">best matching sequence: 8DKP_1|Chains</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">sequence identity: 100.00%</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">8 residue(s) missing from PDB chain (0 at start, 1 at end)</span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">1 gap(s) in chain</span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">SRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHXXXXX</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">|||||||||||||||||||||||||||||||||||||||||||||||||||||||
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">SRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHSGSGS</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">XXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">|
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">SGS---------------------------------------------------------</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMGEQFVTGETIREA</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">|||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">---------------------------------------------MMGEQFVTGETIREA</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIYEGPGISI</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIYEGPGISI</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">KLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLC</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">KLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLC</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKRAQLD</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">LDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKRAQLD</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">GLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKY</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">GLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKY</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">EFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVHRIN</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">EFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFVHRIN</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">PDB file</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">DPKVSIDELIADPVEVV-</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800apple-converted-space"> </span><span class="m_2055055195256365800s1">|||||||||||||||||
</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">sequence</span><span class="m_2055055195256365800apple-converted-space">
</span><span class="m_2055055195256365800s1">DPKVSIDELIADPVEVVR</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="m_2055055195256365800p2"><u></u> <u></u></p>
<p class="m_2055055195256365800p1"><span class="m_2055055195256365800s1">[tannerjj@dizzy pdbs]$</span><span class="m_2055055195256365800apple-converted-space"> </span><u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
</div>
</div>
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