Phenix Documentation - 1.13-2998

Phenix programs and their functions
The Phenix graphical interface
Tutorials and Examples
Overview of video tutorials
Dictionary of crystallographic and other terms
FAQs: Frequently asked questions
How to install, setup and run Phenix
Complete Phenix reference documentation
Bibliography
Index

Crystallographic Structure Solution with Phenix

Phenix Documentation for X-ray Crystallography

Checking data quality | Experimental phasing | Molecular replacement | Model building | Structure refinement
Structure validation | Ligand fitting | Making geometry restraints | Structure deposition

Phenix Documentation for Neutron Crystallography

Structure refinement | Structure validation | Making geometry restraints | Structure deposition

Phenix Documentation for Electron Microscopy (EM)

Structure refinement | Making geometry restraints | Fit a biomolecule to a map | Build a model | Convert map to structure factors | Auto-sharpen a map | Segment a map | Extract box with map and model