Install Cryo_fit

Contents

1. Install Phenix

See the installation notes for Phenix

3. Install gromacs_cryo_fit

Download gromacs-4.5.5_cryo_fit.zip from here

../images/cryo_fit_download_1.png ../images/cryo_fit_download_2.png

Install using a provided script.

python <user phenix>/modules/cryo_fit/steps/0_install_cryo_fit/install_cryo_fit.py
<cryo_fit.zip> <install_path>

Please use absolute path, for example,

python
/Users/doonam/bin/phenix-dev-2906/modules/cryo_fit/steps/0_install_cryo_fit/install_cryo_fit.py
~/Downloads/gromacs-4.5.5_cryo_fit.zip ~/cryo_fit

will work.

Relative path like

python
/Users/doonam/bin/phenix-dev-2906/modules/cryo_fit/steps/0_install_cryo_fit/install_cryo_fit.py
~/Downloads/gromacs-4.5.5_cryo_fit.zip ..

doesn't work.

4. Troubleshooting