Cryo_fit2 FAQ

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I see a message of "RuntimeError: cctbx Error: Miller index not in structure factor map"
My input (before cryo_fit2) and output (after cryo_fit2) pdb files have different molecule sizes

I see a message of "RuntimeError: cctbx Error: Miller index not in structure factor map"

Please consider to enter a correct resolution.

Doonam uses either EMDB reported resolution or phenix.mtriage derived resolution

My input (before cryo_fit2) and output (after cryo_fit2) pdb files have different molecule sizes

Although pdb text files show similar scales, input (before cryo_fit2) and output (after cryo_fit2) pdb files may show different molecule sizes in pymol when Doonam used map that was made from phenix.map_box

Analysis is ongoing. In the mean time, please use UCSF chimera instead.