phenix.geometry_minimization: regularize model geometry

Description

The program idealizes model geometry according to standard geometry restraints.

In addition it can use extra restraints such as:

Ramachandran plot,

secondary structure,

reference to starting position,

C-beta deviations restraints,

amino-acid residue side-chain rotamer restraints,

other user-defined (custom) restraints.

Command line usage examples:

% phenix.geometry_minimization model.pdb

GUI

Graphical user interface is available

List of all available keywords