Working with AlphaFold2, RoseTTAFold and other predicted models

You can use the predicted models from AlphaFold and other prediction software in Phenix. Using these models can be very helpful in structure determination because the models can be very accurate over much of their length and the models come with accuracy estimates that allow removal of poorly-predicted regions.

GUI documentation for most used programs:

• Overview: AlphaFold and Phenix
• Processing a predicted model
• Docking a processed predicted model in a cryo-EM map
• Rebuilding a docked predicted model in a cryo-EM map
• Processing, docking and rebuilding a predicted model in a cryo-EM map
• Trimming overlapping parts of models