| dev-3139 | 2018-05-13 | successful |
ci, intel-windows, intel-windows-x86_64, mac-intel-osx-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-centos5 |
docs; changelog |
| User notes for dev-3139: Fix Windows issue with plotting |
| dev-3126 | 2018-04-30 | successful |
ci, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-centos5 |
docs; changelog |
| User notes for dev-3126: Plotting on Windows can cause a crash (error message relating to axes). |
| dev-3120 | 2018-04-24 | successful |
intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-centos5, ci, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows |
docs; changelog |
| User notes for dev-3120: Fixed phenix.map_to_model GUI |
| dev-3112 | 2018-04-16 | successful |
ci, mac-intel-osx-x86_64, intel-windows, intel-windows-x86_64, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5 |
docs; changelog |
| User notes for dev-3112: Known issues
- phenix.map_to_model - GUI not working since it has not been updated to changes in CLI yet
- phenix.real_space_refine - FSC curve in validation after refinement in GUI is not correct; run validation separately for correct curve
- phenix.erraser
|
| dev-3092 | 2018-03-27 | successful |
ci, mac-intel-osx-x86_64, intel-windows, intel-windows-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-centos5 |
docs; changelog |
| 1.13-2998 | 2017-12-23 | successful |
ci, intel-windows, intel-windows-x86_64, intel-linux-2.6-centos5, mac-intel-osx-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5 |
Official 1.13 release; docs; changelog |
| User notes for 1.13-2998: Improvements:
- phenix.map_to_model - better symmetry support and improved runtime efficiency
- phenix.structure_search - structural library and internal support for mmCIF
- phenix.ligand_identification - limit ligand size for search
- Phaser 2.8.1 - various bug fixes
- Structure Comparison - more/improved validation information (ligands, waters, cis/trans peptides, HIS protonation)
- GUI - automatic validation after phenix.real_space_refine; visual improvements in validation
- Internal bug fixes and performance improvements
|
| 1.12-2829 | 2017-07-07 | successful |
ci, intel-windows-x86_64, mac-intel-osx-x86_64, intel-windows, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5 |
Official 1.12 Release; docs; changelog |
| User notes for 1.12-2829: New Tools: phenix.secondary_structure_validation, Structure Comparison, phenix.mtriage, phenix.real_space_diff_map
Improvements: better sharpening algorithms in phenix.auto_sharpen; better iterative map improvement in phenix.map_to_model; individual mapping in phenix.map_to_object; better outlier rejection in ssm-rmsd calculation in phenix.find_alt_orig_sym_mate; Secondary structure restraints use angles for restraining hydrogen bonds; User-defined box in phenix.polder in addition to atom selection; various improvements to phenix.real_space_refine; can have different restraints for different copies of the same ligand in the same model; better control of peptide planes and omega angles; faster calculation of clashscore; improved handling of cis-peptides in ramalyze; various bug fixes and updated dependencies
GUI: new interfaces for phenix.mtriage, phenix.map_box, phenix.auto_sharpen, phenix.map_to_model, phenix.ncs_average, phenix.sculpt_ensemble |
| 1.11.1-2575 | 2016-10-26 | successful |
ci, intel-windows-x86_64, intel-windows, mac-intel-osx-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5, intel-linux-2.6-x86_64-centos5 |
Official 1.11.1 Release; docs; changelog |
| User notes for 1.11.1-2575: Improved geometry restraints, improved NCS search, new map tools (phenix.polder for omit maps without bulk solvent in omitted region, phenix.model_map and phenix.mask for generating maps and bulk solvent masks, phenix.auto_sharpen for cleaning up maps, phenix.segment_and_split_map for segmenting maps), new model-building tools (phenix.map_to_model for low-resolution maps, phenix.chain_comparison for matching residues and direction), improved phenix.real_space_refine and added GUI, improve model geometry (phenix.model_idealization and phenix.geometry_minimization), improved Phaser, improved validation (phenix.reduce and phenix.ramalyze), simplified Rosetta installation, improved support for Amber, updated dependencies, Unicode support in GUI, unified interface for atom selections |
