PHENIX nightly builds


	Python-based Hierarchical ENvironment for Integrated Xtallography

PHENIX nightly build distribution

These installers are built automatically using the current source code and are automatically tested. We do not release installers that have known major problems, so these builds should be suitable for most purposes. Official releases and builds deemed to be "stable" are noted as such and highlighted in bold type.

If you do use the nightly builds, we recommend updating frequently; once a build disappears from the list here, it can be assumed to be obsolete.

If you encounter errors when using any of these builds, please update to the most recent build before sending a bug report. (It is generally a good idea to update frequently anyway, since the code changes rapidly.)

Note: Phenix installers are available for most Windows systems, including both 32-bit (XP or newer) and 64-bit (Windows 7 or newer) versions. Some programs or features are not available because of limitations of the Windows platform; please read the platform support notes for details. We appreciate any feedback about bugs or inconsistencies.

You will need proper authentication to download the installer; see the main download page for details.

Version	Date	Status	Logs	Info
dev-3318	2018-11-08	successful	ci, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5	docs; changelog
dev-3311	2018-11-01	successful	ci, intel-linux-2.6-centos5, intel-linux-2.6-x86_64-centos6, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows, intel-linux-2.6-x86_64-centos5	docs; changelog
dev-3304	2018-10-25	successful	ci, intel-windows, mac-intel-osx-x86_64, intel-windows-x86_64, intel-linux-2.6-centos5, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5	docs; changelog
User notes for dev-3304: 32-bit Windows version no longer available
dev-3297	2018-10-18	successful	ci, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows, intel-linux-2.6-x86_64-centos5	docs; changelog
1.14-3260	2018-09-11	successful	ci, mac-intel-osx-x86_64, intel-windows-x86_64, intel-windows, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5, intel-linux-2.6-x86_64-centos5	Official 1.14 release; docs; changelog
User notes for 1.14-3260: Reorganization and addition of cryo-EM tools phenix.mtriage - assess map and model quality phenix.auto_sharpen - map sharpening phenix.map_symmetry - identify symmetry in maps phenix.map_box - cut out unique parts of maps phenix.combine_focused_maps - combine different maps phenix.dock_in_map - automatically place a model into a map phenix.map_to_model - automatically build model into a map phenix.sequence_from_map - identify sequence from a map phenix.real_space_refine - improved refining to models phenix.validation_cryoem - separate tool for comprehensive validation of models and maps Phaser Bug fixes Improved data information content functionality Ligands Better support for metals and metal clusters Added support for QM package, Orca Other improvements Better performance NCS search Generating secondary structure restraints Clashscore calculation phenix.ligand_identification - option to generate ligand library based on sequence and structural homologs of input
1.13-2998	2017-12-23	successful	ci, intel-windows, intel-windows-x86_64, intel-linux-2.6-centos5, mac-intel-osx-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-x86_64-centos5	Official 1.13 release; docs; changelog
User notes for 1.13-2998: Improvements: phenix.map_to_model - better symmetry support and improved runtime efficiency phenix.structure_search - structural library and internal support for mmCIF phenix.ligand_identification - limit ligand size for search Phaser 2.8.1 - various bug fixes Structure Comparison - more/improved validation information (ligands, waters, cis/trans peptides, HIS protonation) GUI - automatic validation after phenix.real_space_refine; visual improvements in validation Internal bug fixes and performance improvements
1.12-2829	2017-07-07	successful	ci, intel-windows-x86_64, mac-intel-osx-x86_64, intel-windows, intel-linux-2.6-x86_64-centos5, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5	Official 1.12 Release; docs; changelog
User notes for 1.12-2829: New Tools: phenix.secondary_structure_validation, Structure Comparison, phenix.mtriage, phenix.real_space_diff_map Improvements: better sharpening algorithms in phenix.auto_sharpen; better iterative map improvement in phenix.map_to_model; individual mapping in phenix.map_to_object; better outlier rejection in ssm-rmsd calculation in phenix.find_alt_orig_sym_mate; Secondary structure restraints use angles for restraining hydrogen bonds; User-defined box in phenix.polder in addition to atom selection; various improvements to phenix.real_space_refine; can have different restraints for different copies of the same ligand in the same model; better control of peptide planes and omega angles; faster calculation of clashscore; improved handling of cis-peptides in ramalyze; various bug fixes and updated dependencies GUI: new interfaces for phenix.mtriage, phenix.map_box, phenix.auto_sharpen, phenix.map_to_model, phenix.ncs_average, phenix.sculpt_ensemble
1.11.1-2575	2016-10-26	successful	ci, intel-windows-x86_64, intel-windows, mac-intel-osx-x86_64, intel-linux-2.6-x86_64-centos6, intel-linux-2.6-centos5, intel-linux-2.6-x86_64-centos5	Official 1.11.1 Release; docs; changelog
User notes for 1.11.1-2575: Improved geometry restraints, improved NCS search, new map tools (phenix.polder for omit maps without bulk solvent in omitted region, phenix.model_map and phenix.mask for generating maps and bulk solvent masks, phenix.auto_sharpen for cleaning up maps, phenix.segment_and_split_map for segmenting maps), new model-building tools (phenix.map_to_model for low-resolution maps, phenix.chain_comparison for matching residues and direction), improved phenix.real_space_refine and added GUI, improve model geometry (phenix.model_idealization and phenix.geometry_minimization), improved Phaser, improved validation (phenix.reduce and phenix.ramalyze), simplified Rosetta installation, improved support for Amber, updated dependencies, Unicode support in GUI, unified interface for atom selections
1.10.1-2155	2015-10-02	successful	(no logs found)	Official 1.10.1 release; docs; changelog
User notes for 1.10.1-2155: New features include: CDL as the default protein restraints, tools for planning a SAD experiment and scaling/merging SAD data, refactored xtriage GUI, use of intensities in molecular replacement, occupancy refinement mode after MR to automatically prune the model, expanded real space refinement for cryo-EM (and X-ray) data, NCS constraints in refinement, improved rotamer fitting in refinement, improved and consolidated secondary structure restraints, validation of peptide planes, protein backbone validation using Cablam, structure search tool, updated feature enhanced map protocol, TLS analysis tools, new continuous integration build system (BuildBot), and many other new utilities and fixes. Includes a Centos6 installer. Fixes for the following issues: Incorrect location used for heavy atom files when running AutoBuild in certain circumstances; Errors when adding hydrogens to waters in ReadySet; Errors when using GUI helper applications that handle sequences (e.g. Blast search)