[cctbxbb] libtbx.configure crashes RE: new requirements for libtbx_refresh.py

[markus.gerstel at diamond.ac.uk]

Hi everyone,

You may find that with the latest cctbx_project updates your libtbx.configure / make reconf crashes with

(...)
  File "(..)/modules/annlib_adaptbx/libtbx_refresh.py", line 6
    print message
                ^
SyntaxError: invalid syntax
make: *** [reconf] Error 1

Solution:

Changes are required in annlib_adaptbx, and you do not have the latest version on your system.
Please run
  cd $(libtbx.find_in_repositories annlib_adaptbx)/..
  rm -rf annlib_adaptbx
  git clone https://github.com/cctbx/annlib_adaptbx.git

Background:
This is related to my earlier email attached below. I couldn't figure out how to update the static tarball of annlib_adaptbx myself, and found it easier to just convert the repository including history. Said repository now lives at https://github.com/cctbx/annlib_adaptbx. Bootstrap has been updated to pull from this location.

To avoid duplication the old repository copy we kept at https://github.com/dials/annlib_adaptbx for DIALS release control now points there, too. I note there is another copy at https://github.com/cctbx-xfel/annlib_adaptbx/network where you may also want to change the existing labels to the correct commit tree. Whoever maintains this - let me know if you want any help.

Builds are still running but it looks like this is the only bit which may require intervention on your end.

-Markus

From: cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix-online.org] On Behalf Of markus.gerstel at diamond.ac.uk
Sent: 16 January 2018 09:29
To: cctbxbb at phenix-online.org
Subject: [cctbxbb] new requirements for libtbx_refresh.py

Hello everyone,
There will soon be a requirement for all libtbx_refresh.py and run_tests.py of cctbx modules to contain the line

from __future__ import absolute_import, division, print_function

I have modified those that I have write access to (everything in cctbx_project, all default modules, dials*, labelit*, phenix*, xia2*), but there may be others that I am not aware of/do not use/do not have access to.

(While you are at it ideally you would want to make sure these files are valid Python2 and 3 code, but that is not strictly required at this time.)

For more information on the patch that requires this change see https://github.com/cctbx/cctbx_project/commit/ecd7192930961fde31c4ba29a049bc8675ea6885

-Markus



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