[phenixbb] Queueing system commands for parallel Phenix/Rosetta jobs

Terwilliger, Thomas Charles terwilliger at lanl.gov
Wed Oct 21 06:10:25 PDT 2015

Hi Yonglin,
Normally you don't need to specify any queueing system commands, so you should be good to go.
Let me know of any problems!
All the best,
Tom T

From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of Yonglin Hu [yonglinhu at gmail.com]
Sent: Tuesday, October 20, 2015 8:46 PM
To: phenixbb at phenix-online.org
Subject: [phenixbb] Queueing system commands for parallel Phenix/Rosetta jobs

Hello All,

We have setup a cluster with several executing nodes and we would like to run our Phenix/Rosetta molecular replacement jobs on the cluster. In the Job Control screen, I put "qsub -q all.q -o  $HOME/log1 -e $HOME/log1" as command to use to run multiple jobs.  But I am not sure what I should use for "queueing system commands".

We are using SGE as the queueing system on  our cluster.

Any help would be greatly appreciated!

Yonglin Hu
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