[phenixbb] Rosetta refine compilation issue Centos 7

[Nigel Moriarty]

Ludovic

I don't have access to Centos7 but have you considered following the advice
of the error message and set $PYTHONHOME?

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Wed, Sep 23, 2015 at 9:11 AM, ludovic Pecqueur <
ludovic.pecqueur at college-de-france.fr> wrote:

> Dear Developers,
>
> I have a fresh Centos 7 system and after installing Phenix I wanted to
> compile the Rosetta.refine module. (Rosetta from source version
> 2015.31.58019)
>
> I have succesfully compiled Rosetta but when I try to build the dedicated
> Rosetta for Rosetta_refine with rosetta.build_phenix_interface after
> setting up PHENIX_ROSETTA_PATH and ROSETTA3_DB I get the following error
> message:
>
> [XXX at ...]$ rosetta.build_phenix_interface nproc=6
> False
> scons: Reading SConscript files ...
> Running versioning script ... Done. (0.1 seconds)
> Could not find platform independent libraries <prefix>
> Could not find platform dependent libraries <exec_prefix>
> Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
> ImportError: No module named site
> CalledProcessError: Command '['./update_options.sh']' returned non-zero
> exit status 1:
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConstruct",
> line 172:
>     main()
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConstruct",
> line 163:
>     SConscript("SConscript", "build")
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
> line 614:
>     return method(*args, **kw)
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
> line 551:
>     return _SConscript(self.fs, *files, **subst_kw)
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py",
> line 260:
>     exec _file_ in call_stack[-1].globals
>   File
> "/usr/local/PROGRAMS/ROSETTA/PHENIX_Rosetta_refine/main/source/SConscript",
> line 28:
>     subprocess.check_call(["./update_options.sh"])
>   File
> "/usr/local/PROGRAMS/XTAL/PHENIX/phenix-1.10-2155/base/lib/python2.7/subprocess.py",
> line 540:
>     raise CalledProcessError(retcode, cmd).
>
> If you have any idea of what could cause the problem, I would welcome any
> suggestions.
> I updated Phenix and I could compile phenix.rosetta_refine without
> problems on Centos 6.7.
>
> Thank you very much for your time and help.
>
> Kind regards,
>
> Ludovic.
>
>
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