[phenixbb] problems in running Phenix

Gianluca Cioci cioci at insa-toulouse.fr
Thu Jun 22 04:01:18 PDT 2023


Dear All,

I am experiencing difficulties in installing Phenix in my Linux system 
based on Ubuntu 20.04.6 LTS (GNU/Linux 5.15.0-75-generic x86_64)

Installation is completed, but when I try tu run phenix I get the message:

12:57:27: Cannot set locale to language "English".
12:57:27: locale 'en_GB' cannot be set.

and in the terminal I get:

Error in sys.excepthook:
Traceback (most recent call last):
   File 
"/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", 
line 898, in _excepthook
     Error.show_exception_dialog(type, value, traceback)
   File 
"/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/Error.py", 
line 76, in show_exception_dialog
     if (app.bug_timer.IsRunning() is False):
AttributeError: 'PhenixApp' object has no attribute 'bug_timer'

Original exception was:
Traceback (most recent call last):
   File 
"/data/software/phenix/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py", 
line 23, in <module>
     run(sys.argv[1:])
   File 
"/data/software/phenix/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py", 
line 17, in run
     wxapp = App.PhenixApp(args)
   File 
"/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", 
line 74, in __init__
     wx.App.__init__(self, 0)
   File 
"/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py", 
line 8628, in __init__
     self._BootstrapApp()
   File 
"/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py", 
line 8196, in _BootstrapApp
     return _core_.PyApp__BootstrapApp(*args, **kwargs)
   File 
"/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", 
line 108, in OnInit
     show_splash_screen(timeout=2000)
   File 
"/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", 
line 952, in show_splash_screen
dlg,-1,citations.format_citation(citations.citations_db.get("phenix")))
   File 
"/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_controls.py", 
line 997, in __init__
_controls_.StaticText_swiginit(self,_controls_.new_StaticText(*args, 
**kwargs))
UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 40: 
ordinal not in range(128)

Anyone has a working solution for this ?

We have tried to change the locale to en_GB, but still it's not working.


With many thanks,


GIA




-- 
Dr. Gianluca CIOCI
Toulouse Biotechnology Institute (TBI)
https://www.toulouse-biotechnology-institute.fr/en/poles/equipe-cimes/
PICT - Plateforme Intégrée de Criblage de Toulouse
http://www.pict.ipbs.fr/

Tel: +33 (0)5 61 55 97 68
E-mail: cioci at insa-toulouse.fr

TBI - INSA Toulouse
135 avenue de Rangueil
31077 Toulouse CEDEX 04
http://www.toulouse-biotechnology-institute.fr



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