[phenixbb] problems in running Phenix

[Billy Poon]

Hi Gianluca,

By default, Phenix uses en_US.utf8 for unicode support. You need to install
that locale with

sudo locale-gen en_US.utf8

You can check what locales are installed with

locale -a

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org


On Thu, Jun 22, 2023 at 4:05 AM Gianluca Cioci <cioci at insa-toulouse.fr>
wrote:

> Dear All,
>
> I am experiencing difficulties in installing Phenix in my Linux system
> based on Ubuntu 20.04.6 LTS (GNU/Linux 5.15.0-75-generic x86_64)
>
> Installation is completed, but when I try tu run phenix I get the message:
>
> 12:57:27: Cannot set locale to language "English".
> 12:57:27: locale 'en_GB' cannot be set.
>
> and in the terminal I get:
>
> Error in sys.excepthook:
> Traceback (most recent call last):
>    File
> "/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py",
> line 898, in _excepthook
>      Error.show_exception_dialog(type, value, traceback)
>    File
> "/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/Error.py",
> line 76, in show_exception_dialog
>      if (app.bug_timer.IsRunning() is False):
> AttributeError: 'PhenixApp' object has no attribute 'bug_timer'
>
> Original exception was:
> Traceback (most recent call last):
>    File
> "/data/software/phenix/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py",
>
> line 23, in <module>
>      run(sys.argv[1:])
>    File
> "/data/software/phenix/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py",
>
> line 17, in run
>      wxapp = App.PhenixApp(args)
>    File
> "/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py",
> line 74, in __init__
>      wx.App.__init__(self, 0)
>    File
> "/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py",
>
> line 8628, in __init__
>      self._BootstrapApp()
>    File
> "/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py",
>
> line 8196, in _BootstrapApp
>      return _core_.PyApp__BootstrapApp(*args, **kwargs)
>    File
> "/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py",
> line 108, in OnInit
>      show_splash_screen(timeout=2000)
>    File
> "/data/software/phenix/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py",
> line 952, in show_splash_screen
> dlg,-1,citations.format_citation(citations.citations_db.get("phenix")))
>    File
> "/data/software/phenix/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_controls.py",
>
> line 997, in __init__
> _controls_.StaticText_swiginit(self,_controls_.new_StaticText(*args,
> **kwargs))
> UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 40:
> ordinal not in range(128)
>
> Anyone has a working solution for this ?
>
> We have tried to change the locale to en_GB, but still it's not working.
>
>
> With many thanks,
>
>
> GIA
>
>
>
>
> --
> Dr. Gianluca CIOCI
> Toulouse Biotechnology Institute (TBI)
> https://www.toulouse-biotechnology-institute.fr/en/poles/equipe-cimes/
> PICT - Plateforme Intégrée de Criblage de Toulouse
> http://www.pict.ipbs.fr/
>
> Tel: +33 (0)5 61 55 97 68
> E-mail: cioci at insa-toulouse.fr
>
> TBI - INSA Toulouse
> 135 avenue de Rangueil
> 31077 Toulouse CEDEX 04
> http://www.toulouse-biotechnology-institute.fr
>
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