[phenixbb] Pb executing phenix.model_idealization

CUNIASSE Philippe Philippe.CUNIASSE at cea.fr
Fri May 5 01:58:50 PDT 2023


Dear all,
I tried to use the phenix.model_idealization code of phenix (in command line) following the syntax suggested inhttps://phenix-online.org/documentation/reference/model_idealization.html
phenix.model_idealization xxxx.pdb
But the code stops on the error :


Traceback (most recent call last):

  File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 1118, in <module>

    run(sys.argv[1:])

  File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 1106, in run

    mi_object.run()

  File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 548, in run

    self._setup_model_h()

  File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 478, in _setup_model_h

    params_h.pdb_interpretation = self.model._pdb_interpretation_params.pdb_interpretation

AttributeError: 'NoneType' object has no attribute 'pdb_interpretation'



Thanks in advance for any suggestion to solve this.

Best regards.

Philippe.


-----------------------------------------------
Philippe Cuniasse, PhD/HDR.
Institut de Biologie Integrative de la cellule.
UMR 9198 CNRS-CEA-Univ Paris Sud
Bat 144 CE-Saclay
91191 Gif-sur-Yvette Cedex
France
Tel:      (33) 1 69 08 56 35
Fax:      (33) 1 69 08 47 12
Email: philippe.cuniasse at cea.fr<mailto:philippe.cuniasse at cea.fr>
Web: http://biodev.cea.fr/rasmot3d/

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