[phenixbb] Pb executing phenix.model_idealization

[Oleg Sobolev]

Hi Philippe,

Thank you for reporting the issue. Can you please send me (OFF list) the
file you used as input so I can fix the issue? All files sent to me are
treated as confidential.

Best regards,
Oleg Sobolev.

On Fri, May 5, 2023 at 2:02 AM CUNIASSE Philippe <Philippe.CUNIASSE at cea.fr>
wrote:

> Dear all,
>
> I tried to use the phenix.model_idealization code of phenix (in command
> line) following the syntax suggested in
> https://phenix-online.org/documentation/reference/model_idealization.html
>
> phenix.model_idealization xxxx.pdb
>
> But the code stops on the error :
>
>
>
> Traceback (most recent call last):
>
>   File
> "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py",
> line 1118, in <module>
>
>     run(sys.argv[1:])
>
>   File
> "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py",
> line 1106, in run
>
>     mi_object.run()
>
>   File
> "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py",
> line 548, in run
>
>     self._setup_model_h()
>
>   File
> "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py",
> line 478, in _setup_model_h
>
>     params_h.pdb_interpretation =
> self.model._pdb_interpretation_params.pdb_interpretation
>
> AttributeError: 'NoneType' object has no attribute 'pdb_interpretation'
>
>
>
> Thanks in advance for any suggestion to solve this.
>
> Best regards.
>
> Philippe.
>
>
>
>
>
> -----------------------------------------------
>
> Philippe Cuniasse, PhD/HDR.
>
> Institut de Biologie Integrative de la cellule.
>
> UMR 9198 CNRS-CEA-Univ Paris Sud
>
> Bat 144 CE-Saclay
>
> 91191 Gif-sur-Yvette Cedex
>
> France
>
> Tel:      (33) 1 69 08 56 35
>
> Fax:      (33) 1 69 08 47 12
>
> Email: philippe.cuniasse at cea.fr
>
> Web: http://biodev.cea.fr/rasmot3d/
>
>
>
> *[image: signature_3031510868]*[image: signature_394100311][image:
> signature_2972121752]
>
> -----------------------------------------------
>
>
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