[phenixbb] generating half maps for combined map using phenix.combine_focused_maps

[Manoj saxena]

Hi Tom,
Thank you so much. yes, it does answer my question.
Have a good day
Regards
Manoj

On Mon, May 15, 2023 at 1:31 PM Tom Terwilliger <
tterwilliger at newmexicoconsortium.org> wrote:

> Hi Manoj,
>
> If you would like to get half-maps produced for combine_focused_maps, then
> yes, you want to supply half-maps for each focused map.
>
> The way it works is that the "full" maps (one for the reference map and
> one for each focused map) are used to determine the weighting on each map
> or region with each map.
>
> Then these weights are applied to the full maps to create the composite
> map.  The same weights are then applied to the corresponding half maps to
> create a pair of composite half-maps.
>
> Let me know if that does not answer the question!
> All the best,
> Tom T
>
> On Mon, May 15, 2023 at 5:00 AM Manoj saxena <mks131 at gmail.com> wrote:
>
>> Hi all,
>>
>> I have a question for generating half  half maps for the combined map in
>> Phenix, I am combining 6 regions of a complex (using local refined maps)
>> and supplying the reference map and a reference model for the complex.
>> Additionally, I am supplying the 2 half maps for the whole complex as input
>> fines.
>> I was wondering if I need to supply 2 half maps for each of the local
>> refined regions as input files in addition to the half maps for the
>> reference map.
>>
>> Thank you
>>
>> regards
>> Manoj
>>
>>
>
> --
> Thomas C Terwilliger
> Laboratory Fellow, Los Alamos National Laboratory
> Senior Scientist, New Mexico Consortium
> 100 Entrada Dr, Los Alamos, NM 87544
> Email: tterwilliger at newmexicoconsortium.org
> Tel: 505-431-0010
>
>
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