[phenixbb] Issue phenix.table1 macOS

[Xavier Brazzolotto]

Hi Pavel,

I will send you and Christopher the files off list.

About the steps.

I was using Phenix 1.21-5207, and the results looked good (about the consistency, for example the CC1/2 were similar to the to results of the autoPROC results…)

Then I’ve recently updated to Sonoma 14.4 (yesterday)

I’ve tried the very last version also (dev-5242) and have a similar issue.

About the Coot loading issue, I can open the refined data run under Sonoma 14.3, but some very last data refined under Sonoma 14.4 don’t load automatically.
I will send a second off list about the coot issue.

Many thanks
Xavier


> Le 9 mars 2024 à 18:28, Pavel Afonine <pafonine at lbl.gov> a écrit :
> 
> Hi Xavier,
> 
> we can debug this now but we need more details. Specifically, we need all input files and the description of steps that lead to the problem and the description of the problem itself. I'm not sure what you refer to as "consistent results". Also, I'm assuming you are using the latest version of Phenix.
> 
> Thanks!
> Pavel
> 
> On 3/9/24 09:11, Xavier Brazzolotto wrote:
>> I am facing a strange issue with phenix.table1
>> 
>> Previously, I had generated a Table1 with the GUI that was ok.
>> Recently, I have updated to Sonoma 14.4 and when I try to rerun phenix.table1 (or use similar model and with same reflections) do not get consistent results, especially in number of reflections, uniques, CC1/2, CC*...
>> 
>> Besides, at the end of a refinement, I do also get an error when the program tries to auto-load the data (model and maps) in Coot…
>> 
>> Any thoughts about this
>> 
>> Xavier
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