Phenix User workshop - Berkeley March 7, 2024
Registration
Registration fee: 45$
Agenda
| Time | Agenda | Lecturer |
|---|---|---|
| 8:30 am | Welcome/Introduction to Phenix | P. Adams |
| 9:00 am | Using AlphaFold predictions for structure determination (30 min) | T. Terwilliger |
| 9:30 am | MR/Docking (30 min) | R. Read |
| 10:00 am | 10 min Break | |
| 10:10 | Tutorial 1: AlphaFold structure prediction, Cryo-EM docking with Emplace Local (30 min) | R. Read, T. Terwilliger |
| 10:40 | Tutorial 2: MR/MR-SAD with AlphaFold (35 min) | R. Read |
| 11:15 | Ligands (45 min) | N. Moriarty |
| 12:00 pm | 50 min lunch break and on-on-one discussions (lunch provided) | |
| 12:50 pm | Tutorial 3: Ligands (20 min) | N. Moriarty |
| 1:10 pm | Refinement (60 min) | P. Afonine, Phenix group members |
| 2:10 pm | Tutorial 4: Refinement tutorial (xtallo or cryo-EM?) (30 min) | P. Afonine |
| 2:40 pm | 10 min break | |
| 2:50 pm | Predict and Build (Xray or cryo-EM) (20 min) | D. Liebschner |
| 3:10 pm | Validation (50 min) | J. Richardson |
| 4:00 pm | Tutorial 5: Validation (30 min) | C. Williams |
| 4:30 pm | Discussion and questions | |
| 4:55 pm | Wrap up, Feed-back survey | |
| 5:00 pm | End | |