Re: [cctbxbb] Fwd: [Dials-support] dials.stills_process crash report

Thanks Rob. I've switched dials.stills_process to using easy_mp.multi_core_run. I tested raising an error in one of the processes and confirmed the program finishes, and that I can print out the error message raised in the process. This is great. Thanks, -Aaron On Wed, Dec 13, 2017 at 4:13 AM, R.D. Oeffner wrote:

Hi Graeme,

As far as I can tell from stills_process.py you're using easy_mp.parallel_map() for your multiprocessing. I should use easy_mp.multi_core_run() instead. It is a different version of easy_mp.parallel_map(). See https://www.phenix-online.org/newsletter/CCN_2017_01.pdf#page=6

One of its features is that it preserves stacktraces from individual child processes should they crash which is helpful for debugging. If a child process crashes in parallel_map() however you will not get a stacktrace from the offending child which makes correcting the misbehaviour more difficult.

Rob

On 13/12/2017 09:34, [email protected] wrote:

...

Folks

Once again, lack of stack traces in easy_mp is a big annoyance

I forget the reasons why printing the actual error was a bad thing, but I do remember a discussion some 18 mo past

Not wishing to replay the entire transaction, but could we revisit this?

Thanks Graeme

Begin forwarded message:

From: mailto:[email protected]> Subject: [Dials-support] dials.stills_process crash report Date: 12 December 2017 at 17:43:41 GMT To: > Cc: [email protected]mailto:[email protected]

Perhaps this means something to someone. This is the SACLA data again, it seems to run happily and then hit a problematic frame? Martin and I see the error at pretty much the same point in the dataset, we were both running on local machines rather than the cluster.

Cheers, Danny

Detector 1 RMSDs by panel: ---------------------------------------------------- | Panel | Nref | RMSD_X | RMSD_Y | RMSD_DeltaPsi | | id | | (px) | (px) | (deg) | ---------------------------------------------------- | 1 | 89 | 0.37442 | 0.48949 | 0.2192 | | 2 | 69 | 0.49627 | 0.4847 | 0.21385 | | 5 | 90 | 0.48267 | 0.59909 | 0.22839 | | 6 | 70 | 0.6094 | 0.55592 | 0.20944 | ---------------------------------------------------- Traceback (most recent call last): File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/build/../modules/dials/command_line/stills_process.py", line 870, in <module> halraiser(e) File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/build/../modules/dials/command_line/stills_process.py", line 868, in <module> script.run() File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/build/../modules/dials/command_line/stills_process.py", line 383, in run preserve_exception_message=True) File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/modules/cctbx_project/libtbx/easy_mp.py", line 623, in parallel_map result = res() File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/modules/cctbx_project/libtbx/scheduling/result.py", line 119, in __call__ self.traceback( exception = self.exception() ) File "/dls/science/groups/scisoft/DIALS/CD/latest/dials-dev201712 12/modules/cctbx_project/libtbx/scheduling/stacktrace.py", line 86, in __call__ raise exception RuntimeError: Please report this error to [email protected]: exit code = -9

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