Hi Pinins, Thanks for the article - that looks like an interesting tool. However, I don’t think this solves my actual problem … Best regards Eike On 05/04/16 10:59, "[email protected] on behalf of pinin" wrote:

MAybe this paper can help you to start you processing: http://journals.iucr.org/d/issues/2015/05/00/kw5115/stdsup.html

Cheers

2016-04-05 10:55 GMT+02:00 Schulz, Eike-Christian :

...

Dear all,

I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here.

The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry.

I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing:

---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle EFFECTIVE TILING 0 0 2282 2282 Indexing error: No module named cxi_user

Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ?

Or am I completely wrong and the error is something different ?

With best regards

Eike

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Hi Nick, Thanks for your help … but unfortunately the problem remains … Any other idea ? Best regards Eike From: mailto:[email protected]> on behalf of Nicholas Sauter mailto:[email protected]> Reply-To: cctbx mailing list mailto:[email protected]> Date: Tuesday 5 April 2016 18:23 To: cctbx mailing list mailto:[email protected]> Subject: Re: [cctbxbb] CCTBX.XFEL problems with synchrotron stills Eike, Possibly issuing the command libtbx.configure xfel followed by changing to the build directory and make would help sort this out. Nick Nicholas K. Sauter, Ph. D. Computer Staff Scientist, Molecular Biophysics and Integrated Bioimaging Division Lawrence Berkeley National Laboratory 1 Cyclotron Rd., Bldg. 33R0345 Berkeley, CA 94720 (510) 486-5713 On Tue, Apr 5, 2016 at 1:55 AM, Schulz, Eike-Christian mailto:[email protected]> wrote: Dear all, I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here. The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry. I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing: ---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle EFFECTIVE TILING 0 0 2282 2282 Indexing error: No module named cxi_user Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ? Or am I completely wrong and the error is something different ? With best regards Eike _______________________________________________ cctbxbb mailing list [email protected]mailto:[email protected] http://phenix-online.org/mailman/listinfo/cctbxbb