Hi Pavel, I'm having trouble using your tool...Can you unpack ~terwill/fofomap.tgz and try: ls coords.pdb native.mtz native.sca peak.mtz peak.sca [ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map peak.mtz native.mtz phase_source=coords.pdb ========================== phenix.fobs_minus_fobs_map ========================= Command line arguments: ['peak.mtz', 'native.mtz', 'phase_source=coords.pdb'] Sorry: No PDB file found. Also: phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb ========================== phenix.fobs_minus_fobs_map ========================= Command line arguments: ['peak.sca', 'native.sca', 'coords.pdb'] *** Parameters: f_obs_1_file_name = None f_obs_1_label = None f_obs_2_file_name = None f_obs_2_label = None high_resolution = None low_resolution = None sigma_cutoff = None phase_source = None scattering_table = *xray neutron Sorry: No reflection data file found. Thanks! -Tom T Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:
fobs_minus_fobs_map