Hi all
I found that COOT is interchanging the traditional colors (green +ve and red -neg) to (green -ve and red +ve), but if read the map using PHENIX GUI, COOT behaves. May be I did some default option wrong in COOT. But even If open the fofc map , COOT interchanges the red for positive
density?
Sorry for the inconvenience.
________________________________
From: r n
To: "[email protected]"
Sent: Wednesday, May 16, 2012 11:16 AM
Subject: [phenixbb] annealing omit map
Hi all
I have omitted some region manually from the pdb and did annealing - cartesian using phenix.refinment, the resulting map has density (1.2 sigma) in 2fofc and also
seen 2.8 sigma negative density on the omitted region?
any suggestions?
Rab
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