Dear Venkat, Could you try this with the latest nightly build? We've just fixed a bug in the anisotropy correction in Phaser (which is the part where the error was triggered). The bug crept in sometime in August and was just fixed on Friday. If this doesn't fix the problem, then perhaps you could send me the data (offline) and I could try to reproduce the problem. Best wishes, Randy Read On 28 Sep 2009, at 18:04, r n wrote:
Hi all
I have come across a new error while running the phenix.automr as follows, it works fine untill last week? Not sure what causes this error.
:Output&, TNT::Vector<double>, double, TNT::Vector<double>, TNT::Vector<double>&, double, double, double, bool&, bool&)+0x1bf0) [0x2aaab34594b0] /home/pgm/phenix-installer-1.4-147/phenix-1.4-147/build/intel- linux-2.6-x86_64/lib/ phaser_ext.so(phaser::Minimizer::ShiftScore(double, phaser::RefineBase&, TNT::Vector<double>&, TNT::Vector<double>&, TNT::Vector<double>&, phaser::Output*, bool)+0x45) [0x2aaab3457845] /home/pgm/phenix-installer-1.4-147/phenix-1.4-147/build/intel- linux-2.6-x86_64/lib/phaser_ext.so(phaser::RefineANO::targetFn() +0x1a4) [0x2aaab34d9054] /lib64/libc.so.6 [0x3e6c830070] Floating-point error (Python and libc call stacks above) This crash may be due to a problem in any imported Python module, including modules which are not part of the cctbx project. To disable the traps leading to this message, define these environment variables (e.g. assign the value 1): BOOST_ADAPTBX_FPE_DEFAULT BOOST_ADAPTBX_SIGNALS_DEFAULT This will NOT solve the problem, just mask it, but may allow you to proceed in case it is not critical.
any help?
Thanks
venkat
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------ Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical Research Tel: + 44 1223 336500 Wellcome Trust/MRC Building Fax: + 44 1223 336827 Hills Road E-mail: [email protected] Cambridge CB2 0XY, U.K. www- structmed.cimr.cam.ac.uk