Dear Billy,
Good morning (hopefully when you see this?!).
I just wanted to double-check that these attachments had reached you?
Many thanks and best wishes,
Paul Tiley
________________________________
From: Paul Tiley
Sent: Thursday, April 16, 2026 7:54 PM
To: Billy Poon
Cc: [email protected]
Subject: Re: [phenixbb] Unable to open phenix.refine
Dear Billy,
Thanks so much for reaching out...really appreciate it. Sorry for the delay. I have been working at a High School Careers Fair today.
Files attached as requested.
Not sure if it is relevant but the test/tutorial files for phenix.refine work for the installation?
Many thanks for your help once more and best wishes,
Paul Tiley
________________________________
From: Billy Poon
Sent: Thursday, April 16, 2026 4:58 AM
To: Paul Tiley
Cc: [email protected]
Subject: Re: [phenixbb] Unable to open phenix.refine
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Can you send me the input parameter file off-list? In the "Job history" tab, select the job and the click on "Show details" in the row of buttons near the bottom. A new dialog shows up and there should be a path for the "Config file" relative to the job directory. That is the parameter file that the GUI tries to load.
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 92R0129
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org
On Wed, Apr 15, 2026 at 3:55 PM mailto:[email protected]> wrote:
Has anyone had problems trying to open phenix.refine? I have installed Phenix 2.0.5936 several times but keep on getting the following error message when I click on phenix.refine:
KeyError : 'Unrecognized input file parameter refinement.gui.migration.refinement.input.sequence.file_name (allowed: data_manager.model.file, refinement.reference_model.file, refinement.gui.migration.refinement.input.pdb.file_name, refinement.gui.migration.refinement.input.pdb.neutron_file_name, refinement.gui.migration.refinement.input.pdb.electron_file_name, refinement.den.reference_file).'
Any help/advice would be much appreciated. Thanks in anticipation!
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