Hi All, the fixed version will be available in the next installer made after version 1.4-51: http://www.phenix-online.org/download/nightly_builds.cgi Pavel. On 4/30/09 1:01 PM, Tom Terwilliger wrote:
Hi Pavel, I'm having trouble using your tool...Can you unpack
~terwill/fofomap.tgz
and try:
ls coords.pdb native.mtz native.sca peak.mtz peak.sca [ttmbpro:transfer/test/testit] terwill% phenix.fobs_minus_fobs_map peak.mtz native.mtz phase_source=coords.pdb
========================== phenix.fobs_minus_fobs_map =========================
Command line arguments: ['peak.mtz', 'native.mtz', 'phase_source=coords.pdb']
Sorry: No PDB file found.
Also:
phenix.fobs_minus_fobs_map peak.sca native.sca coords.pdb
========================== phenix.fobs_minus_fobs_map =========================
Command line arguments: ['peak.sca', 'native.sca', 'coords.pdb']
*** Parameters: f_obs_1_file_name = None f_obs_1_label = None f_obs_2_file_name = None f_obs_2_label = None high_resolution = None low_resolution = None sigma_cutoff = None phase_source = None scattering_table = *xray neutron
Sorry: No reflection data file found.
Thanks! -Tom T
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545
Tel: 505-667-0072 email: [email protected] mailto:[email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org http://www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
On Apr 30, 2009, at 11:39 AM, Pavel Afonine wrote:
fobs_minus_fobs_map
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