Hi Katya, I'm sorry for the trouble! Can you first check to make sure you have a recent version of phenix (i.e., in the last few months). There was an earlier version that sometimes had this problem but I think that it should not be happening now. If not, can you download a current nightly build (take one from a few days ago to be safe) and try again? If that does not do it, then if you could email me a listing of the autoBuild directories with "ls -lR" and send me the AutoBuild_run_1_/ AutoBuild_run_1_1.log file that would be most helpful. All the best, Tom T Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss On May 20, 2009, at 11:51 AM, Katya Heldwein wrote:
Hi, I am trying to run Autobuild to generate a very good rebuilt model using
phenix.autobuild data=data.mtz model=coords.pdb multiple_models=True \ include_input_model=True \ multiple_models_number=1 n_cycle_rebuild_max=5
with some modifications.
When I run it, I get the following error:
******************************************************************************** Failed to carry out AutoBuild_multiple_models:
[Errno 2] No such file or directory: 'AutoBuild_run_1_/TEMP0/ temporary.com' ********************************************************************************
How can I troubleshoot this problem?
Katya
-- Ekaterina Heldwein, Ph.D. Assistant Professor Department of Molecular Biology and Microbiology Tufts University 136 Harrison Ave Boston, MA 02111
phone: 617-636-0858 fax: 617-636-0337 e-mail: [email protected]
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