Purity There is documentation here https://phenix-online.org/documentation/reference/refinement.html as well as YouTube channel https://www.youtube.com/@PhenixTutorials In your case, you may be able to get answers with command line tools. Are you able to run commands? Cheers Nigel --- Nigel W. Moriarty Building 92-4-431M1, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Email : [email protected] Web : CCI.LBL.gov ORCID : orcid.org/0000-0001-8857-9464 On Mon, Jun 8, 2026 at 8:57 AM Ezennubia, Purity via phenixbb < [email protected]> wrote:
Hello everyone,
I am new to this forum and I am glad this exists for discussions between phenix users.
I have been trying to create a bond between two atoms belonging to different symmetry but when I create the bond restraints on phenix, I get an error message that says custom bonds with excessive length and I later realized the problem is not the bond length but the fact that the two atoms are in different symmetry.
Is there a way to make this work on phenix? I would love suggestions on this.
Thank you, Purity _______________________________________________ phenixbb mailing list -- [email protected] To unsubscribe send an email to [email protected] Unsubscribe: phenixbb-leave@%(host_name)s