phenix-installer-1.4-55-intel-linux-2.6-x86_64.tar
I downloaded the newest nightly build per Nathaniel Echols' instructions. I
was trying to fix the following error:
A Python error was detected. This is almost certainly a bug; please send an
email containing this message to [email protected] so we can fix
it. Thanks!
IndexError : string index out of range
Traceback:
Traceback (most recent call last):
File "/usr/local/phenix-1.4-3/
phenix/wxGUI2/Refine.py", line 259, in OnExcept
raise event.data
IndexError: string index out of range
phenix.refine_gui and phenix.refine were working perfectly well and then all
of the sudden between 2 saves, something went wrong. My first PDB
(refine_001-coot-2.pdb) is normal, but then refine_001-coot-3.pdb and onward
are missing ALL of the REMARK cards. It starts with the CRYST card followed
by the coordinates.
Could this be a coot problem? Can I cut and paste the REMARKs from
refine_001-coot-2.pdb into the top of refine_001-coot-5.pdb?
Thanks!
On Mon, May 4, 2009 at 12:06 PM, Ralf W. Grosse-Kunstleve
Possible quick fix: yum install lapack
However, we don't really want to depend on a system lapack. I'd like to track down why we have that dependency. Could you send me the file name of the tar file you downloaded?
Ralf _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb