Dear all, I tried to install Cryo_fit on my labtop Macbook pro M1 running OSX 13.0. The installation of the Cryo_fit itself in Phenix went well. I then tried to install gromacs (gromacs-4.5.5_cryo_fit) following the instructions found on https://phenix-online.org/documentation/tutorials/cryo_fit_install.html#id1 But during the compilation, I encoutered the following error that stops the process. cc -DHAVE_CONFIG_H -I. -I../../src -I/usr/include/libxml2 -I../../include -DGMXLIBDIR=\"/Applications/phenix-1.20.1-4487/modules/cryo_fit/cryo_fit/share/top\" -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 -std=gnu99 -I./include -MT md.o -MD -MP -MF .deps/md.Tpo -c -o md.o md.c md.c:414:9: error: call to undeclared function 'please_cite'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration] please_cite(stderr,"Kim2019"); ^ md.c:421:23: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] init_em_map(fplog,ftp2fn(efEMM, nfile, fnm), emmap, ir, state_global,cr); ^~~~~~~~~~~~~~~~~~~~~~~~~ ../../include/cryoem.h:43:44: note: passing argument to parameter 'emfile' here extern void init_em_map(FILE *fplog, char *emfile,t_emmap *emmap, t_inputrec *ir, t_state *state, t_commrec *cr); ^ 1 warning and 1 error generated. I did it under a bash shell, Python version : 2.7.15 cc --version Apple clang version 14.0.3 (clang-1403.0.22.14.1) Target: arm64-apple-darwin22.1.0 Thread model: posix InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin Any suggestion to solve it ? Thanks in advance for your help. Philippe. ----------------------------------------------- Philippe Cuniasse, PhD/HDR. Institut de Biologie Integrative de la cellule. UMR 9198 CNRS-CEA-Univ Paris Sud Bat 144 CE-Saclay 91191 Gif-sur-Yvette Cedex France Tel: (33) 1 69 08 56 35 Fax: (33) 1 69 08 47 12 Email: [email protected]mailto:[email protected] Web: http://biodev.cea.fr/rasmot3d/ [signature_1537351220][signature_732259530][signature_3011392973] -----------------------------------------------
