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Thanks, Nat! Just to be clear: the format for lists on the command line for autobuild is different than for a parameters file. In a parameters file, you leave off the quotes for the list; on the command line you use quotes around the entire list. All the best, Tom T On Jul 14, 2010, at 4:40 PM, Nathaniel Echols wrote:
On Wed, Jul 14, 2010 at 3:04 PM, J J
wrote: Tom, I have tried what you suggested. rebuild_chain_list= "A B" rebuild_res_end_list= "50 50" rebuild_res_start_list="10 10" Both do not work. Try leaving the quotes out or enclosing only the individual chain IDs or residue numbers in quotes - these parameters are all supposed to be lists of values, and the parser groups anything in quotes as a single list item.
-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss