[phenixbb] SAD related query

Dear all, I am a novice user of phenix. I am trying to obtain phases for SAD dataset collected at 2.5 angs from autosol.But when i give the phases to autobuild, the R-factor is not decreasing below 49%. Also, in warp, it is unable to built with a message "encounterd an unknown element". Can someone suggest me what could be the problem. Thanks for any suggestion in advance. Tara Kashav On 9/3/07, [email protected] < [email protected]> wrote:

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Today's Topics:

1. command-line Patterson maps (Bryan W. Lepore)

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Message: 1 Date: Sun, 2 Sep 2007 00:07:51 -0500 (CDT) From: "Bryan W. Lepore" Subject: [phenixbb] command-line Patterson maps To: [email protected] Message-ID: < Pine.LNX.4.64.0709020001190.16588@cpe-70-116-17-26.austin.res.rr.com> Content-Type: TEXT/PLAIN; charset=US-ASCII; format=flowed

will phenix calculate Pattersons from trial sites or a reflection file on the command line? i.e. something besides hacking what is already there.

e.g. cns has predict_patterson.inp. i can't seem to find a way to do it from the command line - such as `phenix.patterson --sg=94 reflections.mtz`. i saw phenix.maps but that looks like electron density only.

-bryan

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End of phenixbb Digest, Vol 22, Issue 1 ***************************************

-- Tara Kashav, Dr. S. Gourinath's Lab, Lab No 430, School of Life Sciences, Jawaharlal Nehru University, New Delhi - 110067