Agnes It should link automatically if the criteria as listed in the previous post are followed. You can check it in the .geo file. I'm happy to take a look at it if you send me the model or even just the three residues involved on list. Nigel NB. Any files sent to me will be held in strictest confidence. On Wed, Nov 14, 2012 at 10:07 AM, Agnes Thiane Pereira Machado < [email protected]> wrote:
Hi We are trying to refine a protein structure with a (covalently) modified residue. The colosest discussion to our problem is:
http://www.phenix-online.org/pipermail/phenixbb/2010-August/015629.html
We ran:
phenix.elbow --residue SSC ourmodel.pdb
And read the due cif file at phenix refinement. The residue by itself is OK, but we were
not able to perform the peptide bond between C and N. How to complete the .cif file such that it has due restraints for the peptide bond with this modified residue?
Agnes
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